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Publications
08 - Research Article

Joshi, A.; Young, D.;  Huang, L.; Mosberger, L.; Munk, B.; Vinzelj, J.; Flad, V.; Sczryba, A.; Griffith, G.W.; Podmirseg, S. M.; Warthmann, R.; Lebuhn, M.; Insam, H.

Effect of Growth Media on the Diversity of Neocallimastigomycetes from Non-Rumen Habitats

Microorganisms, 2022

07 - Research Article

Vinzelj, J.; Joshi, A.; Young, D.; Begovic, L.; Peer, N.; Mosberger, L.; Schmid Lüdi, K.C.; Insam, H.; Flad, V.; Nagler, M.; Podmirseg, S. M.

No Time to Die: Comparative Study on Preservation Protocols for Anaerobic Fungi

Frontiers in Microbiology, 2022

06 - Research Article

Young, D.; Joshi, A.; Huang, L.; Munk, B.; Wurzbacher, C.; Youssef, N.H.; Elshahed, M.S.; Moon, C.D.; Ochsenreither, K.; Griffith, G.W.; Callaghan, T.M.; Sczyrba, A.; Lebuhn, M.; Flad, V.

Simultaneous Metabarcoding and Quantification of Neocallimastigomycetes from Environmental Samples: Insights into Community Composition and Novel Lineages

Microorganisms 2022, 10, 1749.

05 - Research Article

Elshahed, M.S.; Hanafy​, R.A.; Cheng​, Y.; Dagar, S.S.; Edwards, J.E.; Flad​, V.; Fliegerová​, K.O.; Griffith​, G.W.; Kittelmann​, S.; Lebuhn​, M.; O'Malley, M.A.; Podmirseg​, S.M.; Solomon​, K.V.; Vinzelj​, J.; Young​, D.; Youssef, N.H.

Characterization and rank assignment criteria for the anaerobic fungi (Neocallimastigomycota)

International Journal of Systematic and Evolutionary Microbiology 2022, 72, 7

04 - Opinion Paper

Nagler, M.; Podmirseg, S.M.; Ascher-Jenull, J.; Sint, D.; Traugott, M.

Why eDNA fractions need consideration in biomonitoring

Molecular Ecology Resources 2022

03 - Research Article

Fliegerova, K.O.; Podmirseg, S.M.; Vinzelj, J.; Grilli, D.J.; Kvasnová, S.; Schierová, D.; Sechovcová, H.; Mrázek, J.; Siddi, G.; Arenas, G.N.; Moniello, G.

The Effect of a High-Grain Diet on the Rumen Microbiome of Goats with a Special Focus on Anaerobic Fungi.

Microorganisms 2021, 9, 157.

02 - Book Chapter

Flad V.; Young, D.; Seppälä, S.; Hooker, C.; Youssef, N.; Podmirseg, S.M.; Nagler, M.; Reilly, M.; Li, Y.; Fliegerová, K.; Cheng, Y.; Griffith, G.W.; Elshahed, M.; Solomon, K.V.; Michelle A. O’Malley, M.A.; Theodorou, M.K.

17. The Biotechnological Potential of Anaerobic Gut Fungi.

In: Benz J.P., Schipper K. (eds) Genetics and Biotechnology.

The Mycota (A Comprehensive Treatise on Fungi as Experimental Systems for Basic and Applied Research), vol 2. Springer, Cham.

01 - Review

Vinzelj, J.; Joshi, A.; Insam, H.; Podmirseg, S. M.

Employing Anaerobic Fungi in Biogas Production: Challenges & Opportunities.

Bioresource Technology 2020, 300, 122687.

Talks & Presentations

Joshi, A.; Huang, L.; Young, D.; Mosberger, L.; Munk, B.; Vinzelj, J.; Flad, V.; Sczyrba, A.; Lebuhn, M.; Podmirseg, S.M.; Insam, H.; Warthmann, R.

Effect of growth media on the diversity of Neocallimastigomycetes from non-rumen habitats

You can watch the recording of this talk on YouTube!

Young, D.; Joshi, A.; Huang, L.; Munk, B.; Flad, V.; Wurzbacher, C.; Youssef, N.; Elshahed, M.S.; Moon, C.D.; Ochsenreither, K.; Sczyrba, A.; Lebuhn, M.

Screening environmental samples for anaerobic gut fungi – Development of a specific primer pair for their conjoined detection, quantification, and classification

You can watch the recording of this talk on YouTube!

2022
IAFC

Young, D.; Stüer-Patowsky, K.; Huang, L.; Flad, V.; Elshahed, M.S.; Youssef, N.; Hanafy, R.; Cheng, Y.; Moon, C.; Soni, P.; Joshi, A.; Stabel, M.; Ochsenreither, K.; Sumit, D.; Hillman, E.; Solomon, K.; Fliegerová, K.; Griffith, G.W.; Callaghan, T.M.; Podmirseg, S.M.; Sczyrba, A.; Lebuhn, M.; Wurzbacher, C.

Third-generation sequencing to the rescue: Analysing the whole ribosomal operon to classify Neocallimastigales

You can watch the recording of this talk on YouTube!

Sonderegger, L.R.; Strobl, S.F.A.; Peer, N.; Vinzelj, J.; Wunderer, M.; Wagner, A.O.; Podmirseg, S.M.

Live and Let Die: Do Changes in the pH Value trigger Resting Stage Formation in Anaerobic Fungi?

You can watch the recording of this talk on YouTube!

Vinzelj, J.; Joshi, A.; Young, D.; Begovic, L.; Peer, N.; Mosberger, L.; Schmid Lüdi, K.C.; Insam, H.; Flad, V.; Nagler, M.; Podmirseg, S. M.

No Time to Die: Comparative Study on Preservation Protocols for Anaerobic Fungi

You can watch the recording of this talk on YouTube!

2021
ISAM

Joshi A., Soussi E., Mosberger L., Podmirseg S., Insam H., Warthmann R., Baier U.

Variation in the Syntrophic Association of Anaerobic Fungi with Rumen Methanogens

Vinzelj J., Fliegerova K, Podmirseg S., Grilli D., Kvasnová S., Schierová D., Sechovcová H., Mrázek J., Siddi G., Arenas G., Moniello G.

The Complex Case of Anaerobic Fungi (Neocallimastigomycota)

Young Fernández-Grandizo D.

All for one and one for all:

improved screening for anaerobic gut fungi in environmental samples

Vinzelj J., Nagler M., Suksong W., O-Thong S., Insam H., Podmirseg S., 

Meet & Breed: Detection and Cultivation of Anaerobic Fungi

Posters
2022
ISME18

Podmirseg, S.M.; Nagler, M.; Ascher-Jenull, J.; Sint, D.; Traugott, M.

Why eDNA fractions need consideration in biomonitoring

ISME18, Lausanne, CH, 14th-19th August 2022

Vinzelj J., Fliegerova K, Podmirseg S., Grilli D., Kvasnová S., Schierová D., Sechovcová H., Mrázek J., Siddi G., Arenas G., Moniello G.

The Complex Case of Anaerobic Fungi (Neocallimastigomycota)

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